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pore_c.datasources module

class pore_c.datasources.Fastq(*args, **kwargs)

Bases: intake.source.base.DataSource

container = 'python'

description = 'A fastq file'

name = 'fastq'

partition_access = False

read_chunked(chunksize=10000)

Return iterator over container fragments of data source

version = '0.1.0'

class pore_c.datasources.IndexedFasta(*args, **kwargs)

Bases: intake.source.base.DataSource

container = 'python'

description = 'A bgzipped and indexed fasta file'

name = 'indexed_bedfile'

partition_access = True

read_chunked()

Return iterator over container fragments of data source

to_dask()

Return a dask container for this data source

version = '0.1.0'

pore_c.config module pore_c.io module