pore_c.catalogs module¶

class pore_c.catalogs.RawReadCatalog(*args, **kwargs)[source]¶

Bases: pore_c.catalogs.basePoreCCatalog

classmethod create(file_paths, *args, **kwds)[source]¶

description = 'A catalog of data associated with raw reads'¶

name = 'pore_c_raw_reads'¶

class pore_c.catalogs.ReferenceGenomeCatalog(*args, **kwargs)[source]¶

Bases: pore_c.catalogs.basePoreCCatalog

property chrom_dtype¶

property chrom_lengths¶

property chrom_order¶

classmethod create(file_paths, *args, **kwds)[source]¶

description = 'An intake catalog file for a reference genome'¶

property genome_id¶

property genome_size¶

name = 'pore_c_reference_genome'¶

class pore_c.catalogs.VirtualDigestCatalog(*args, **kwargs)[source]¶

Bases: pore_c.catalogs.basePoreCCatalog

classmethod create(file_paths, *args, **kwds)[source]¶

description = 'An intake catalog file for a virtual digest of a reference genome'¶

name = 'pore_c_virtual_digest'¶

pore_c.analyses.reference module pore_c.cli module