.fast5 Outputs¶
Warning
This file format is deprecated.
ONT .fast5 files are Hierarchical Data Format 5 files, with specific layout for Nanopore data. They are superseded by POD5.
Paths¶
The following path patterns are used to place the data on disk:
| File | Path Pattern |
|---|---|
| .fast5 File | fast5{basecall_status}/{alias}/{flow_cell_id}{basecall_status}_{alias_}{short_protocol_run_id}_{short_run_id}_{batch_number}.fast5 |
See the Patterns documentation for more information on file patterns.
Read Batching¶
The following batching options are used by default:
| Option | Value |
|---|---|
| Read Count | 4000 |
For more information on batching see Batching.