Adaptive Sampling Timings CSV

Format version: 0.1

This CSV file records the real-time data that the Adaptive Sampling process used in its decision making.

Paths

The following path patterns are used to place the data on disk:

File	Path pattern
AS Timings file	adaptive_sampling/AS_timings_{flow_cell_id}_{short_protocol_run_id}_{short_run_id}.csv

See the Patterns documentation for more information on file patterns.

Columns

channel

Regex ^[0-9]+$

Required

Examples
1
512
3000

The 1 indexed number for the channel the read was sequenced on.

read_id

Regex [a-f0-9]{8}-[a-f0-9]{4}-[4-5][a-f0-9]{3}-[89ab][a-f0-9]{3}-[a-f0-9]{12}

Required

Examples
d3b07384-d9a2-4c93-9fc1-8e2d64b64b63

A unique UUID for the sequenced read.

batch_time

Regex ^[0-9]+(\.[0-9]+)?$

Required

Examples
1717337285.653

Time, in seconds, since the epoch. Groups reads that were sent to the basecaller in the same batch.

samples

Regex ^[0-9]+$

Required

Examples
12000

Raw data samples sent to the basecaller for this read

bases

Regex ^[0-9]+$

Required

Examples
843

Basecalled sequence length returned from the basecaller

barcode_arrangement

Regex ^(barcode[0-9]+|[A-Za-z0-9\-_\.]+|unclassified)?$

Required

Examples
barcode12
unclassified

If barcoding is enabled this is the assigned barcode classification. Either 'barcode[0-9]+', '[A-Za-z0-9-_.]+', 'unclassified', or ''

mean_qscore

Regex ^[0-9]+(\.[0-9]+)?$

Required

Examples
12.7

Mean quality score for the returned sequence

time_to_package_and_send

Regex ^[0-9]+$

Required

Examples
356

Time between packaging the read for sending to the basecaller and when it was sent.

time_in_basecaller

Regex ^[0-9]+$

Required

Examples
1428

Time between sending this read to the basecaller and it returning.