Adaptive Sampling Decisions CSV

Format version: 0.1

This CSV file records the decisions — whether a read was sequenced completely or unblocked — made by the live Adaptive Sampling process. There may be duplicated read IDs in this file due to the asynchronous implementation of the script.

Paths

The following path patterns are used to place the data on disk:

File	Path pattern
AS Decisions file	adaptive_sampling/AS_decisions_{flow_cell_id}_{short_protocol_run_id}_{short_run_id}.csv

See the Patterns documentation for more information on file patterns.

Columns

read_id

Regex [a-f0-9]{8}-[a-f0-9]{4}-[4-5][a-f0-9]{3}-[89ab][a-f0-9]{3}-[a-f0-9]{12}

Required

Examples
e4994c62-93f9-439a-bc8f-d20c95a137a5

A unique UUID for the sequenced read.

action

Regex sequence|unblock

Required

Examples
sequence
unblock

Adaptive sampling action taken for this read.

action_response

Regex SUCCESS|FAILED_READ_FINISHED|FAILED_READ_TOO_LONG

Required

Examples
SUCCESS

MinKNOW's response to the action.